SNP Profiles matching POUND 7 /B

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 Key

 1234567891011121314
_Input profile
TTCCACGGCTGGAACCAACTAGGGAACC
1._RUQ_6
TTCCACGGCTGGAACCAACTAGGGAACC
2._RUQ_1534
TTCCACGGCTGGAACCAACTAGGGAACC
3._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
4._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
5._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
6._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
7._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
8._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
9._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
10._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
11._POUND_7_/B
__ACGGCT_AACCAACT__AA_
12._POUND_7_/B
__ACGGCT_AACCAACT__AA_
13._POUND_7_/B
__ACGGCT_AACCAACT__AA_
14._POUND_7_/B
__ACGGCT_AACCAACT__AA_
15._POUND_7_/B
__ACGGCT_AACCAACT__AA_
16._POUND_7_/B
__ACGGCT_AACCAACT__AA_
17._POUND_7_/B
__ACGGCT_AACCAACT__AA_
18._POUND_7_/B
__ACGGCT_AACCAACT__AA_
19._PA_150_[PER]
__ACGGCT_AACCAACT__AA_
20._POUND_7_/B
__ACGGCT_AACCAACT__AA_
21._RUQ_24
__ACGGCT_AACCAACT__AA_
22._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
23._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
24._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
25._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
26._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
27._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
28._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
29._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
30._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
31._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
32._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
33._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
34._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
35._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
36._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
37._RUQ_1231
TTCCACGGCCGGAACCAACTAGGGAACC
38._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
39._RUQ_1651
TTCCACGGCTGGAA-AACCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGTGGAACCCTTTGGGGTTACCC
1._RUQ_6
AACCCTGTGGAACCCTTTGGGGTTACCC
2._RUQ_1534
AACCCTGTGGAACCCTTTGGGGTTACCC
3._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
4._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
5._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
6._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
7._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
8._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
9._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
10._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
11._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
12._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
13._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
14._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
15._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
16._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
17._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
18._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
19._PA_150_[PER]
AACCCTGTGGAA_CT_GG___CC
20._POUND_7_/B
AACCCTGTGGAA_CT_GG___CC
21._RUQ_24
AACCCTGTGGAA_CT_GG___CC
22._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
23._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
24._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
25._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
26._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
27._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
28._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
29._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
30._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
31._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
32._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
33._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
34._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
35._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
36._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
37._RUQ_1231
AACCCCGTGGAACCCTTTGGGGTTACCC
38._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
39._RUQ_1651
AACCTTGT-AACC-TT-GGTTCCCG
 29303132333435363738394041 
_Input profile
CCAGCCCTGGGGTTTTTTCCTTCCAAX_X
1._RUQ_6
CCAG-CTGGGGTTTTTTCCTTCCAAX_X
2._RUQ_1534
CCAG-CTGGGGTTTTTTCCTTCCAAX_X
3._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
4._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
5._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
6._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
7._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
8._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
9._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
10._EET_272_[ECU]
_AG_CT___TT__TTCCAAX_X
11._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
12._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
13._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
14._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
15._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
16._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
17._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
18._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
19._PA_150_[PER]
_AG_CT___TT__TTCCAAX_X
20._POUND_7_/B
_AG_CT___TT__TTCCAAX_X
21._RUQ_24
_AG_CT___TT__TTCCAGX_X
22._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
23._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
24._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
25._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
26._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
27._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
28._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
29._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
30._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
31._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
32._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
33._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
34._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
35._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
36._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
37._RUQ_1231
CCAGCCCCGGGGTTTTTTCCTTCCAAX_X
38._GC-03-032-3-11
CCAGCTCTGGGGTTTT_CCTTCCAAX_X
39._RUQ_1651
--CCCTGGGG-TT-CCTT--X_X

Input profile: POUND_7_/B RUQ_24

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU] RUQ_6

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._TRD_32 RUQ_1534

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

4._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

5._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

6._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

7._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

8._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

13._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

14._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

15._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

16._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

17._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

18._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

19._PA_150_[PER]

identical
23 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

20._POUND_7_/B

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

21._POUND_7_/B RUQ_24

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

24._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

25._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

27._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

29._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

32._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

33._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

34._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

35._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

36._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

37._LZ_8 RUQ_1231

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._EET_272_[ECU] GC-03-032-3-11

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

39._GEBP_450_/A-F_[ADI] RUQ_1651

91.9 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484